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Some species
GPM Cyclone, simple search form
spectra
common, mzXML, mzData, DTA, PKL or MGF only
taxon
Select one or more.
Eukaryotes
Prokaryotes
Viruses
Include reversed sequences:
all
15
N amino acids
|
none |
mixed |
only |
with peptide log(e) <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
and protein log(e) <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
measurement errors
Fragment mass error:
Da
ppm
residue modifications
Complete modifications 1
:
specify your own
Complete modifications 2
:
specify your own
Potential modifications
:
specify your own
Check for known PTMs
yes
no
refinement specification
Potential modifications (
unimod
):
round 1
round 2
mods:
motifs:
mods:
motifs:
Check for known PTMs
yes
no
sAPs:
yes
no
Semi-style cleavage:
yes
no
Valid expectation: <
0
-1
-2
-3
-4
-5
-6
-7
-8
-9
protein cleavage specification
Cleavage site:
Semi-style cleavage:
yes
no
spectrum conditioning
Remove redundant:
yes
no, angle:
(0-90)
Spectrum synthesis:
yes
no
predefined methods
Method: Select device & parent δm.
Orbitrap (20 ppm)
Quad-TOF (100 ppm)
Quad-TOF (0.5 Da)
Ion Trap (4 Da)
gpmdb
Add to gpmDB:
yes
restricted
no
parameter name = "gpmdb, add"
This parameter is not used by the search engine: it is a GPMDB directive. This parameter can have three values, with the following interpretations:
yes
- add this data set to the public GPMDB data repository;
restrict
- add this data set to the GPMDB data repository, but make it only available to users through the
GPM portal for reviewers
; or
no
- do not add the data to GPMDB.
Archive MS/MS information
yes
no
parameter name = "gpmdb, store trace"
This parameter is not used by the search engine: it is a GPMDB directive. This parameter can have two values, with the following interpretations:
yes
- store a compressed version of the original MS/MS spectra (including uninterpretable spectra) in the GPMDB trace repository
ftp site
; or
no
- do not store the original data.
Anonymous contribution:
yes
no
more ...
name:
institution:
email:
project:
description:
organelle:
(
GO
)
cell type:
(
CELL
)
cell culture:
(
BRENDA
)
tissue type:
(
BRENDA
)
MS information:
(
PSI-MS
)